This is page for BEEML-PBM program.

Here's a zip file of example R scripts used to learn PWM from PBM data
Here are the PWMs BEEML-PBM learned from PBM data from UniPROBE database. These were used in Zhao & Stormo Nature Biotechnology 2011 paper to show PWM model can provide good quantitative model for the specificity of most TFs.