Welcome to the GreenGenie2 online submission form!
NEW GreenGenie2 is Cufflinks friendly!
Click here to download the GreenGenie2 v4 catalog preformatted for the Cufflinks RNAseq analysis package!
Reference:Kwan AL, Li L, Kulp DC, Dutcher SK, Stormo GD: Improving Gene-finding in Chlamydomonas reinhardtii: GreenGenie2. BMC Genomics 2009, 10:210
Paste an input DNA sequence in standard fasta format to get started! (Maximum length: 150,000 bases)
Now, indicate how many genes you expect to be in the input sequence.
Do you want predictions on one or both strands?
Chlre4 parameters are provided as a potential source of alternate gene models. Short-sequence prediction performance is comparable to the default (Chlre3).
Specify the number of characters per fasta row.
You can also enter a header for the JGI "Add custom track" feature. Enter the appropriate header using the templates below, click "go to Annotations" on the results page and copy the lines where instructed to paste into the JGI "Add custom track" pop-up window.
If your input sequence is from a scaffold:
browser position scaffold_36:1235-1440track name=gg2pred description="mygene"
If your input sequence is from a chromosome:
browser position chromosome_1:1235760-1240491track name=gg2pred description="mygene"