GreenGenie2

Welcome to the GreenGenie2 online submission form!

NEW GreenGenie2 is Cufflinks friendly!

Click here to download the GreenGenie2 v4 catalog preformatted for the Cufflinks RNAseq analysis package!

Enter a DNA sequence | forward strand required for custom track computation
[example] [reset form]

Paste an input DNA sequence in standard fasta format to get started! (Maximum length: 150,000 bases)
Predict... one or more genes. up to one gene.
Now, indicate how many genes you expect to be in the input sequence.
Make predictions on... both strands. forward strand only.
Do you want predictions on one or both strands?
Make predictions using... Chlre3 EST assembly models. Chlre4 EST assembly models (beta).
Chlre4 parameters are provided as a potential source of alternate gene models. Short-sequence prediction performance is comparable to the default (Chlre3).
Output fasta row length? 60 90
Specify the number of characters per fasta row.
JGI Genome Browser Custom Track Header (optional)
[example] [reset form]

You can also enter a header for the JGI "Add custom track" feature. Enter the appropriate header using the templates below, click "go to Annotations" on the results page and copy the lines where instructed to paste into the JGI "Add custom track" pop-up window.

If your input sequence is from a scaffold:
browser position scaffold_36:1235-1440
track name=gg2pred description="mygene"

If your input sequence is from a chromosome:
browser position chromosome_1:1235760-1240491
track name=gg2pred description="mygene"